Preface | Prerequisites | Basic Installation | Development version | External Dependencies | CMTK+nat on Windows

Introduction | Neurons as Graphs | Built-in neuron graph functions | Strahler Order | Spine | Segment graph | ngraph objects | Walking along ngraph objects | Node identifiers and indices | Downstream nodes | Distal nodes

Introduction | Comparing rgl and plotly | Recommendation | Limitations | Plotly | Plotly + nat | plotly setup | plotly examples | rgl setup

Preface | Startup | Neurons and Neuronlists | Sample Data | Neurons | Neuron internal structure | Methods for neurons | Neuronlists | Worked Examples | Metadata | Working on all the neurons in a neuronlist | Plots | 3D plots | Putting it all together | Learning More

Introduction | Vertex information | Worked example - plane cutting a tract | PCA to find tract vector | Tract vector for each neuron | Lines crossing a plane

Startup | Clustering with NBLAST scores | All by all scores | Clustering | 3D plot